Publication

Mularoni L., Ramos-Rodríguez M. and Pasquali L. The Pancreatic Islet Regulome Browser. Front. Genet. 8 (2017). https://doi.org/10.3389/fgene.2017.00013

Version Author Date
2640665 Mireia Ramos 2020-05-28
b086ab5 Mireia Ramos 2020-04-23

Data & Code availability

The menu under the IRB topic provides access to the Islet Regulome Browser (IRB) application and its code.

  1. plotRegulome R package. This custom R package contains the necessary functions to download and plot the data contained in the Islet Regulome Browser.

  2. IRB Shiny App code. The IRB app is built using the Shiny R package. The linked github repository contains the code and scripts necessary to build the interactive web app.

  3. Islet Regulome Browser. This link provides access to the IRB web app.


sessionInfo()
R version 4.0.2 (2020-06-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Catalina 10.15.5

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale:
[1] es_ES.UTF-8/es_ES.UTF-8/es_ES.UTF-8/C/es_ES.UTF-8/es_ES.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.5      rstudioapi_0.11 whisker_0.4     knitr_1.29     
 [5] magrittr_1.5    R6_2.4.1        rlang_0.4.7     stringr_1.4.0  
 [9] tools_4.0.2     xfun_0.16       git2r_0.27.1    htmltools_0.5.0
[13] ellipsis_0.3.1  rprojroot_1.3-2 yaml_2.2.1      digest_0.6.25  
[17] tibble_3.0.3    lifecycle_0.2.0 crayon_1.3.4    bookdown_0.20  
[21] later_1.1.0.1   vctrs_0.3.2     promises_1.1.1  fs_1.4.2       
[25] glue_1.4.1      evaluate_0.14   rmarkdown_2.3   stringi_1.4.6  
[29] compiler_4.0.2  pillar_1.4.6    backports_1.1.8 httpuv_1.5.4   
[33] pkgconfig_2.0.3