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Note: As this work is the result of a collaboration and Décio Eizirik’s group was the lead in this project, some results shown here might not exactly coincide with the ones published in the paper, as some analyses were re-run later with modified parameters.
The different datasets that were used in the publication can be downloaded from GEO with the following accessions:
GEO ID | Experiment | Link |
---|---|---|
GSE133219 | ATAC-seq | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE133219 |
GSE133218 | RNA-seq | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE133218 |
GSE148058 | RNA-seq 2 | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148058 |
ATAC-seq and ChIP-seq experiments were processed using the custom pipelineNGS
R package. The specific scripts used for processing such data can be found at the corresponding folders inside data/IFNa/
, in the source code repository for this website.