Table form idxstats

Given a bam file, returns samtools idxstats output as a data.frame.

Usage

tableFromIdxstats(log)

Arguments

bam

Character string with the name and path of a single BAM file. Index should be in the same folder.

Value

A data.frame with the output of samtools idxstats.

Examples

if (FALSE) {
df <- tableFromIdxstats("path/to/file.bam")
}