Offset correction for SE ATAC-seq data

It performs offset corrrection on single end ATAC-seq files.

Usage

offsetATACSE(file, chunk = 1e+06, positive = 4L, negative = 5L)

Arguments

file

Path for the BAM file.

chunk

Size of the chunk to load into memory for ATAC-seq read offset. This argument is necessary only when type="SE".

positive

Positive offset: 4.

negative

Negative offset: 5.