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Quality Control with FastQC

fastqc.Rd

Runs FastQC for quality control analysis of FastQ files.

Usage

fastqc(files, path_fastqc = "fastqc/", cores = 6)

Arguments

files

String or character vector with the path and filename of the FastQ files.

path_fastqc

Character indicating the output directory for the FastQC reports.

cores

Number of threads to use for the analysis.

Value

Creates a folder path_fastqc containing the output reports generated by FastQC. See the FastQC documentation

for details.

Examples

if (FALSE) {
fastqc(files="path/to/fastq/file.fastq.gz",
       path_fastqc="fastqc/", cores=6)
}